SNP Profiles of TSH 516   View Data

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 Key

 1234567891011121314
_Input profile
CGATACGGCTACCGAACTAAAGAGACCT
1._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
2._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
3._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
4._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
5._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
6._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
7._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
8._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
9._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
10._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
11._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
12._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
13._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
14._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
15._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
16._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
17._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
18._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
19._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
20._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
21._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
22._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
23._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
24._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
25._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
26._GC-08-208-6-04
CGATACGG_ACCGAACTAAAGAGACCT
27._TSH_516
CGATACGG_ACCGAACTAAAGAGACCT
28._RUQ_1018
CGATACGGCTACCGAACTAAAGAGACCT
29._RUQ_1018
__ACGGCTACCGAACTAA_AGACCT
30._RUQ_1018
__AC____AA____AA_
31._GC-08-209-6-05
CGATACGT_ACCCAGCCAAAAAGAACC
32._TSH_516
CGATACGT_ACCCAGCCAAAAAGAACC
33._RUQ_1018
CGATACCCAGACCGAAAGAAAG_AC_
 1516171819202122232425262728
_Input profile
GTCGACTTAGGTCGCTCTCGATCTAGCT
1._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
2._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
3._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
4._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
5._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
6._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
7._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
8._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
9._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
10._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
11._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
12._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
13._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
14._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
15._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
16._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
17._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
18._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
19._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
20._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
21._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
22._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
23._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
24._GC-08-208-6-04
GTCGAC_AGGTCGCTCTCGATCTAGCT
25._TSH_516
GTCGAC_AGGTCGCTCTCGATCTAGCT
26._GC-08-208-6-04
GTCG_TT_GTCG_CTCGATCTAGCT
27._TSH_516
GTCG_TT_GTCG_CTCGATCTAGCT
28._RUQ_1018
GTCGACTTGGGTCGCTCTCGATCTAGCT
29._RUQ_1018
GTGGACTT_GTCG-____AGCT
30._RUQ_1018
_CGAC_GGGTCG_____AG_
31._GC-08-209-6-05
GGCCACTTAAGTCGCTCTCGATCTAGCT
32._TSH_516
GGCCACTTAAGTCGCTCTCGATCTAGCT
33._RUQ_1018
ACCGACAA_ACCGAGAGCGATAGAGAG
 293031323334353637383940  
_Input profile
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
1._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
2._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
3._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
4._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
5._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
6._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
7._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
8._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
9._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
10._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
11._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
12._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
13._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
14._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
15._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
16._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
17._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
18._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
19._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
20._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
21._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
22._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
23._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
24._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
25._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
26._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
27._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
28._RUQ_1018
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
29._RUQ_1018
____GT___CTCGAG_X_XX_X
30._RUQ_1018
AG_CT_GT____CG__X_XX_X
31._GC-08-209-6-05
AGAACTCTGTCCACCTCCCGAGCTX_XX_X
32._TSH_516
AGAACTCTGTCCACCTCCCGAGCTX_XX_X
33._RUQ_1018
AGAT__ACAGACAGAGCGAGAGX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

2._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

11._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

14._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

15._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

16._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

17._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

18._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

19._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

20._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

21._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

22._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

23._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

25._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

26._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

28._TSH_516 RUQ_1018

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._TSH_516 RUQ_1018

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._TSH_516 RUQ_1018

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

33._TSH_516 RUQ_1018

57.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520